rs30319860 SNP Detail

Summary

• ID
  rs30319860
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:52891909 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAAGTCAT CTCCTGTAAG
  TAAGTACTGC TCTTCCCTCT GGCTGCCCTA AGATGCTTCT CTTATGGTAA TAAGGTATCA
  TATGACAGTG ATCAAGCTTT TGGTGATCTG AGGACACTGG AGTGCCCTGT GCAACTTCTC
  TGTCCAGGCT TTCTTACTGT TAAGCATGCT GATCCACATC TCGCATGGCA TCTGGAGAAA
  S
  TTCTCGCATT AATAAGCCCT GCCTGGTCCC TCAGGAGGGA TGGATGTTGT ATTTTAGATA
  GTGTACTTTC CAGGTCTAAG TGCAGCAGGC TGTAACTTCC TTCCTTCCTT ATTCTCTCGG
  TGTACTGATG CTTTCCTTTA GTGCACAGAC ACGTTTCCAA GGCTCGCTGT AAATATCTGC
  TCATGGCACA CACATCAGCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46935260	NES10819905	PERLEGEN	MM_PANEL2	f	SNP	G		C	G	G	G	G	G	C	C	G		G	G	G	G		C
ss135180503	ENSMUSSNP1554420	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C						C
ss320766339	CHEV_3_52788410	CHEVERUD	SCREENING_POP	f	SNP												G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30319860					SNP	G	G	C	G	G	G	G	G	C	C	G	G	G	G	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46935260	NES10819905	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52891909 () rs orientation: forward

Symbol	Name	Function Class
Cog6	component of oligomeric golgi complex 6	Intron
Gm65168	predicted gene, 65168	within coordinates
Rr397670	regulatory region 397670	1045 bp upstream
Rr576615	regulatory region 576615	177 bp distal
Rr576616	regulatory region 576616	943 bp proximal