rs30319857 SNP Detail

Summary

• ID
  rs30319857
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:52891793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCCCAGAC CCTCAGAAAA
  TTCTCTACCA TTGAGCCCCG AGGTCCACAC AGTTCATGAA CACACTCATT CAGCTTGCTA
  AAGACAACAC TGTCTTCTAC CTGCAGTGTC TCCAACCCAA AGTCATCTCC TGTAAGTAAG
  TACTGCTCTT CCCTCTGGCT GCCCTAAGAT GCTTCTCTTA TGGTAATAAG GTATCATATG
  R
  CAGTGATCAA GCTTTTGGTG ATCTGAGGAC ACTGGAGTGC CCTGTGCAAC TTCTCTGTCC
  AGGCTTTCTT ACTGTTAAGC ATGCTGATCC ACATCTCGCA TGGCATCTGG AGAAACTTCT
  CGCATTAATA AGCCCTGCCT GGTCCCTCAG GAGGGATGGA TGTTGTATTT TAGATAGTGT
  ACTTTCCAGG TCTAAGTGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46935257	NES10819904	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G	G	G	A	A	A	G		A	G	G	A		A
ss135180501	ENSMUSSNP2033879	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
ss320766338	CHEV_3_52788294	CHEVERUD	SCREENING_POP	f	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30319857					SNP	G	G	A	G	G	G	G	A	A	A	G	G	A	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46935257	NES10819904	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52891793 () rs orientation: forward

Symbol	Name	Function Class
Cog6	component of oligomeric golgi complex 6	Intron
Gm65168	predicted gene, 65168	within coordinates
Rr397670	regulatory region 397670	1161 bp upstream
Rr576615	regulatory region 576615	61 bp distal
Rr576616	regulatory region 576616	1059 bp proximal