rs30319297 SNP Detail

Summary

• ID
  rs30319297
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52936570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTTCTATA TACCAGTGTG
  GGTATGGTCA CTCAGACAAG CCCACCTTCG AGGACCAGAG GATAAAGTTA TACTCATGGA
  GAAGAGTAGA GAACGGATAG TAGTAGTGTT TGTGTGTTGG GGTGGAGGGA TATACCTACG
  TATATTCATT GGAATATATC CAATATAGAA ATATATATTT TTCTATCAGG GAAACTAGTA
  W
  TTTTTAAGCC GTCAAATAAT GGAAACAAAG TTGATGAGCT CCTTGAAGTA CCAAACTATA
  CCCCGGAGGC CCCAGCAGGT GTCGCTGTTG AGAGAGATTG AGTCTGTCTT TGGCTGAACA
  CTGAAGTCCT TGATAGACCT GCAAAGTACC CTATCCATTA CTCTTCCTCC AGGAAAGATT
  TCTCTTCTAA GTAAGGAAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46935938	NES10817324	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A		T	A	A	T		T
ss320766567	CHEV_3_52833071	CHEVERUD	SCREENING_POP	f	SNP										A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30319297					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46935938	NES10817324	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52936570 () rs orientation: forward

Symbol	Name	Function Class
Rr576621	regulatory region 576621	332 bp distal
Rr576622	regulatory region 576622	within coordinates
Rr576623	regulatory region 576623	68 bp proximal