CCTTTCTATA TACCAGTGTG GGTATGGTCA CTCAGACAAG CCCACCTTCG AGGACCAGAG GATAAAGTTA TACTCATGGA GAAGAGTAGA GAACGGATAG TAGTAGTGTT TGTGTGTTGG GGTGGAGGGA TATACCTACG TATATTCATT GGAATATATC CAATATAGAA ATATATATTT TTCTATCAGG GAAACTAGTA W TTTTTAAGCC GTCAAATAAT GGAAACAAAG TTGATGAGCT CCTTGAAGTA CCAAACTATA CCCCGGAGGC CCCAGCAGGT GTCGCTGTTG AGAGAGATTG AGTCTGTCTT TGGCTGAACA CTGAAGTCCT TGATAGACCT GCAAAGTACC CTATCCATTA CTCTTCCTCC AGGAAAGATT TCTCTTCTAA GTAAGGAAGA W = A/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss46935938 | NES10817324 | PERLEGEN | MM_PANEL2 | f | SNP | A | A | A | A | A | A | T | A | A | T | A | A | T | T | ||
ss320766567 | CHEV_3_52833071 | CHEVERUD | SCREENING_POP | f | SNP | A | T | ||||||||||||||
SNP Consensus Information | |||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
||||
rs30319297 | SNP | A | A | A | A | A | A | T | A | A | A | T | A | A | T | T | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss46935938 | NES10817324 | PERLEGEN | MM_PANEL | f | SNP | A/T |
Location: Chr3:52936570 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Rr576621 | regulatory region 576621 | 332 bp distal | ||||||
Rr576622 | regulatory region 576622 | within coordinates | ||||||
Rr576623 | regulatory region 576623 | 68 bp proximal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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