rs30319098 SNP Detail

Summary

• ID
  rs30319098
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:52891635 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAAAATAG CTTCTCTCCA
  CATTCAGGTT CTGAGATCAC TGAGAGTGAG CTTTCCTAGG GTGCAATCCA ATGCACACCA
  GGAGAAAAAC TTCAACAATT AAGGGCTATG CAGACAATAC AGTTTGCTTT TACTGGGGCT
  AGGAGTTGAA GCCAGGGTTT GCCCAGACCC TCAGAAAATT CTCTACCATT GAGCCCCGAG
  S
  TCCACACAGT TCATGAACAC ACTCATTCAG CTTGCTAAAG ACAACACTGT CTTCTACCTG
  CAGTGTCTCC AACCCAAAGT CATCTCCTGT AAGTAAGTAC TGCTCTTCCC TCTGGCTGCC
  CTAAGATGCT TCTCTTATGG TAATAAGGTA TCATATGACA GTGATCAAGC TTTTGGTGAT
  CTGAGGACAC TGGAGTGCCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45561032	mCV22817317	ABI	CRAMUS_MOUSE	f	SNP	C	C	G					G		G
ss46935248	NES10819896	PERLEGEN	MM_PANEL2	f	SNP	C		G	C	C	C	C		G	G	G	C		G	C	C	G		G
ss135180496	ENSMUSSNP1531704	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G							G
ss320766336	CHEV_3_52788136	CHEVERUD	SCREENING_POP	f	SNP													C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30319098					SNP	C	C	G	C	C	C	C	G	G	G	G	C	C	G	C	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46935248	NES10819896	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52891635 () rs orientation: forward

Symbol	Name	Function Class
Cog6	component of oligomeric golgi complex 6	Intron
Gm65168	predicted gene, 65168	within coordinates
Rr397670	regulatory region 397670	1319 bp upstream
Rr576615	regulatory region 576615	within coordinates
Rr576616	regulatory region 576616	1217 bp proximal