rs30319095 SNP Detail

Summary

• ID
  rs30319095
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:52891522 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCACTGAG CTAACAAATG
  AATTGCTTGC TTCTAGAATC AGGGAGCTTG TTACTCAGTA CTTAGGATTC TCGTTGCCTA
  ACAACCCGCA GCATTGCCAC AAACCTACTG GTCCTAAAAA TAGCTTCTCT CCACATTCAG
  GTTCTGAGAT CACTGAGAGT GAGCTTTCCT AGGGTGCAAT CCAATGCACA CCAGGAGAAA
  R
  ACTTCAACAA TTAAGGGCTA TGCAGACAAT ACAGTTTGCT TTTACTGGGG CTAGGAGTTG
  AAGCCAGGGT TTGCCCAGAC CCTCAGAAAA TTCTCTACCA TTGAGCCCCG AGGTCCACAC
  AGTTCATGAA CACACTCATT CAGCTTGCTA AAGACAACAC TGTCTTCTAC CTGCAGTGTC
  TCCAACCCAA AGTCATCTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45433175	mCV22817310	ABI	CRAMUS_MOUSE	f	SNP	G	G	A					A
ss46935245	NES10819895	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G	G	G		G	A	A	G		G	G	G	G		A
ss135180494	ENSMUSSNP1455857	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
ss320766334	CHEV_3_52788023	CHEVERUD	SCREENING_POP	f	SNP													G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30319095					SNP	G	G	A	G	G	G	G	A	G	A	A	G	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46935245	NES10819895	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52891522 () rs orientation: forward

Symbol	Name	Function Class
Cog6	component of oligomeric golgi complex 6	Intron
Gm65168	predicted gene, 65168	within coordinates
Rr397670	regulatory region 397670	1432 bp upstream
Rr576615	regulatory region 576615	within coordinates
Rr576616	regulatory region 576616	1330 bp proximal