rs30318382 SNP Detail

Summary

• ID
  rs30318382
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87082179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CTGGCCCCTC CTCTCGTCCC GCGCCCCCTA ATAATTTCTG CCCTCCGGCT TTATCTCTCG
  GGGCCTCTCT CAACCTCCGC GCCGCGCGCT CTCTCTCCCT CTCCCTCTCT TCCCTCCCCG
  GCTCCCTCCC TCTCTTCCTG ACGTCTGCTC TCCCTCCGAC GGCGCCTCCC TCCACTGCCC
  TCCCCTGGTC CCCCAACGCG CGCGCACACA CTCGCTCCGC TCGCTGGAAC CGAGATGGGA
  GGAGAGCAAA GAGAAAGGAA TTGAGGGCAG AGGCAAGGGG TGGGGAGGGG TGGGGAGAAC
  R
  AGGCGTCGCA GGCTCTGGAG CAAGGACCGC TGGGTCCTGG CCCACCAGTG CTTGGTGCGA
  GACCTACTTT TACCCCCAGT GGTGTAACTG AGCCGGGCAT GGGGTGGCAG CCAGGACTGA
  GGACGAACCT TCATCAATTT GGATGACTGT GTTAGGAGGG GTGTGCTTCT TATGCGTCTG
  GGGGATGGGG GTGTAAAAGC TTTAAGATCT CTTCTTCGTT TTAATCCCAA ACCCCAGAAT
  CTAACCCTAG ATGCCTAAAT TAAGAATTCT CAATTAACTC GAGAGTGTTG GAGAGGGAGA
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45418482	mCV24904428	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G	G
ss135455076	ENSMUSSNP2253161	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30318382					SNP	A	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87082179 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13330	CpG island 13330	within coordinates
Gm64310	predicted gene, 64310	within coordinates
Kirrel1	kirre like nephrin family adhesion molecule 1	125 bp upstream
Rr579455	regulatory region 579455	705 bp distal
Rr579456	regulatory region 579456	333 bp distal
Rr579457	regulatory region 579457	within coordinates
Rr579458	regulatory region 579458	867 bp proximal
Rr579459	regulatory region 579459	953 bp proximal
Tssr33927	transcription start site region 33927	387 bp upstream
Tssr33928	transcription start site region 33928	294 bp upstream
Tssr33929	transcription start site region 33929	217 bp upstream
Tssr33930	transcription start site region 33930	193 bp upstream