rs30318352 SNP Detail

Summary

• ID
  rs30318352
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:52891471 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCTTATTA ACCATGCTCT
  GTAAACTGGT TGTATTTGAA ACAGTTATTT AAAGCACTGA GCTAACAAAT GAATTGCTTG
  CTTCTAGAAT CAGGGAGCTT GTTACTCAGT ACTTAGGATT CTCGTTGCCT AACAACCCGC
  AGCATTGCCA CAAACCTACT GGTCCTAAAA ATAGCTTCTC TCCACATTCA GGTTCTGAGA
  Y
  CACTGAGAGT GAGCTTTCCT AGGGTGCAAT CCAATGCACA CCAGGAGAAA AACTTCAACA
  ATTAAGGGCT ATGCAGACAA TACAGTTTGC TTTTACTGGG GCTAGGAGTT GAAGCCAGGG
  TTTGCCCAGA CCCTCAGAAA ATTCTCTACC ATTGAGCCCC GAGGTCCACA CAGTTCATGA
  ACACACTCAT TCAGCTTGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45528108	mCV22817308	ABI	CRAMUS_MOUSE	f	SNP	C	C	T				T
ss46935242	NES10819893	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C		C	T	T	C		C	C	C		T
ss135180488	ENSMUSSNP7239104	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
ss320766332	CHEV_3_52787972	CHEVERUD	SCREENING_POP	f	SNP												C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30318352					SNP	C	C	T	C	C	C	T	C	T	T	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46935242	NES10819893	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52891471 () rs orientation: forward

Symbol	Name	Function Class
Cog6	component of oligomeric golgi complex 6	Intron
Gm65168	predicted gene, 65168	within coordinates
Rr397670	regulatory region 397670	1483 bp upstream
Rr576615	regulatory region 576615	within coordinates
Rr576616	regulatory region 576616	1381 bp proximal