rs30318349 SNP Detail

Summary

• ID
  rs30318349
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:52891365 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATGTCCTT CAAAATGCTG
  AACATTAAGA AATCGTTTAC CCAGTTACAA GTGTCAAAAT TTCAAAACTC TTAGTACAGA
  TCAGTAAGGA AGTACACAGA GAAACCATTC TTATTAACCA TGCTCTGTAA ACTGGTTGTA
  TTTGAAACAG TTATTTAAAG CACTGAGCTA ACAAATGAAT TGCTTGCTTC TAGAATCAGG
  R
  AGCTTGTTAC TCAGTACTTA GGATTCTCGT TGCCTAACAA CCCGCAGCAT TGCCACAAAC
  CTACTGGTCC TAAAAATAGC TTCTCTCCAC ATTCAGGTTC TGAGATCACT GAGAGTGAGC
  TTTCCTAGGG TGCAATCCAA TGCACACCAG GAGAAAAACT TCAACAATTA AGGGCTATGC
  AGACAATACA GTTTGCTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46935239	NES10819891	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30318349					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46935239	NES10819891	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52891365 () rs orientation: forward

Symbol	Name	Function Class
Cog6	component of oligomeric golgi complex 6	Intron
Gm65168	predicted gene, 65168	within coordinates
Rr397670	regulatory region 397670	1589 bp upstream
Rr576615	regulatory region 576615	within coordinates
Rr576616	regulatory region 576616	1487 bp proximal