rs30318346 SNP Detail

Summary

• ID
  rs30318346
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:52891335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCGATCATC TTCACGTTCC
  TACCAACTTC TTATGTCCTT CAAAATGCTG AACATTAAGA AATCGTTTAC CCAGTTACAA
  GTGTCAAAAT TTCAAAACTC TTAGTACAGA TCAGTAAGGA AGTACACAGA GAAACCATTC
  TTATTAACCA TGCTCTGTAA ACTGGTTGTA TTTGAAACAG TTATTTAAAG CACTGAGCTA
  M
  CAAATGAATT GCTTGCTTCT AGAATCAGGG AGCTTGTTAC TCAGTACTTA GGATTCTCGT
  TGCCTAACAA CCCGCAGCAT TGCCACAAAC CTACTGGTCC TAAAAATAGC TTCTCTCCAC
  ATTCAGGTTC TGAGATCACT GAGAGTGAGC TTTCCTAGGG TGCAATCCAA TGCACACCAG
  GAGAAAAACT TCAACAATTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46935236	NES10819890	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30318346					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46935236	NES10819890	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52891335 () rs orientation: forward

Symbol	Name	Function Class
Cog6	component of oligomeric golgi complex 6	Intron
Gm65168	predicted gene, 65168	within coordinates
Rr397670	regulatory region 397670	1619 bp upstream
Rr576615	regulatory region 576615	within coordinates
Rr576616	regulatory region 576616	1517 bp proximal