rs30318271 SNP Detail

Summary

• ID
  rs30318271
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52936228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTTTAATC GCTGAGCCAT
  CTCTCTAGCC TGGAGGTATT TTCTTAAATG AGGTTCCTTC CTCTGTAATG ATTCTAGCTT
  GTGTCAGGTT GGCATAAAAC CAGTCAGCAC AGCAAATTTC TCCGAATTTC CTTTTACTTT
  TCCTGGATTG ACAGGTGCAG ACTTTTGCAT GTATTGCGTA CACTGTCCCC AGGCTTCACC
  W
  TCTGGTGTGG TTAGCCTGGG TTTGGGCTCT CAGTATGGCA GCAAGGATAC CTGGTATCTA
  CAGAGCATCA GTGGGGATGT TCTCTTACTC ACCCAGGTGA AGCCGTATCT GTCGACTTCC
  CCACTGCAGT TACATTGTTG CCCTTTCTAT ATACCAGTGT GGGTATGGTC ACTCAGACAA
  GCCCACCTTC GAGGACCAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46935932	NES10817408	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30318271					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46935932	NES10817408	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52936228 () rs orientation: forward

Symbol	Name	Function Class
Rr576621	regulatory region 576621	within coordinates
Rr576622	regulatory region 576622	327 bp proximal
Rr576623	regulatory region 576623	410 bp proximal