rs30318247 SNP Detail

Summary

• ID
  rs30318247
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151856825 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGGTTAAG GGGTATACTG
  AAGTGATAAA ATTATAAATA TCATGGCTGC AGAGATTGTT CGGCAGTTAG GAGTACTTGC
  TGATCTTGTA GAGAACCCAG GCTCAATTCC CAGCATCCAT ATGGCAGCTC ACAACTATCT
  GTAGCTCCAG TTCCAAGAGA TCCAATGTTG TCCTCTAGCT CTCTGAGCAC CTGCATATAC
  R
  TGACACACGT ACTCACTCTC AGGGCATGCA TACATGTGAC ACACATACTC TCAGGGCATG
  CACACATATG ACACACATAC TCACTCTCAG CACCTGCATA CATGCCCTGA GACATGTACT
  CACTCTCAGC ACCTGCATAC ATGTGACACA CATGCTTTCA GCACCTGCAC ATATGTGACA
  CATGTACTCA CTCATAAATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
ss45418382	mCV24210658	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss136101120	ENSMUSSNP6218773	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G
ss321028245	CHEV_3_151814152	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
rs30318247					SNP	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151856825 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gipc2	GIPC PDZ domain containing family, member 2			Intron
				Noncoding-Transcript-Variant
Gm64753	predicted gene, 64753			1102 bp upstream
Rr587468	regulatory region 587468			760 bp distal
Rr587469	regulatory region 587469			612 bp proximal
Rr587470	regulatory region 587470			1138 bp proximal