rs30317639 SNP Detail

Summary

• ID
  rs30317639
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:25032985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTAG CCTGCTTAAA ATTCCAGTCC
  Y
  ATAGTGAGGG ATAAAATAGG CAGAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45915167	mCV23784780	ABI	CRAMUS_MOUSE	f	SNP		T	C					T		C
ss51566793	NES14862269	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	T		C	C	T	T		T	T		C
ss133080528	ENSMUSSNP3318371	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
ss321770847	CHEV_6_24982986	CHEVERUD	SCREENING_POP	f	SNP													C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30317639					SNP	T	T	C	C	C	C	T	T	C	C	T	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51566793	NES14862269	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:25032985 () rs orientation: forward

Symbol	Name	Function Class
Gm38777	predicted gene, 38777	109 bp upstream
Rr379081	regulatory region 379081	within coordinates
Rr627285	regulatory region 627285	864 bp proximal