rs30317592 SNP Detail

Summary

• ID
  rs30317592
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:56879459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGATAGG AGGCTGTTGT
  TGCTCAATTG GGCAGAGTTC CAATTTTTAA ATAAAAACTG TCCTATGGGT GGCGTGTGGT
  GGTAATGGGT GCACAGTAAT GTACATGTAT TTATTAGTGT CACCAAACGG TGACTAAAAT
  GGTACCTCTT GTATTATGCA AATTTTACTC CAGTGGGACT GAAGGAGACT TTTACATTTT
  R
  TTTATATTTT CCAGCAGCTT TTGGTAAATT TTAATAAAAC CACGCCAAAA ATTGAAGACC
  AGAATAAAAC TGTAATATGC AGGTATAACA GTGTCCATTT GTAGTCTCAG CCACTAAGGA
  TTTGAGGCAG GAGAATCATT TAGTCTCTGG GGGCCAGCCT TGGTAACACA ACATGAAAGT
  TTCTGCTGTT GTTATTAATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45917539	mCV23495468	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss133233745	ENSMUSSNP120255	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30317592					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56879459 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm53332	predicted gene, 53332			within coordinates
Nt5c3	5'-nucleotidase, cytosolic III			Intron
				Noncoding-Transcript-Variant
Rr379412	regulatory region 379412			within coordinates
Rr631115	regulatory region 631115			841 bp distal
Rr631116	regulatory region 631116			98 bp distal
Rr631117	regulatory region 631117			593 bp proximal
Rr631118	regulatory region 631118			677 bp proximal
Rr631119	regulatory region 631119			903 bp proximal
Rr631120	regulatory region 631120			1215 bp proximal
Tssr1860	transcription start site region 1860			330 bp upstream
Tssr61149	transcription start site region 61149			636 bp upstream
Tssr61150	transcription start site region 61150			583 bp upstream
Tssr61151	transcription start site region 61151			555 bp upstream