rs30317367 SNP Detail

Summary

• ID
  rs30317367
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:52890905 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGTTCCT ACTAGTGGGC
  AGTGTTTACT GTTTATTAAA GTCTCCGTCG TCACATGCAC CCTCCTGAGC CAGGGGCTGC
  ATTTTACCCA GTGCTTGGCC ATGAGGAACA GAACAGTGCC CCACATATAG ATGTGCCTGC
  ACTTAGAATG GGCTTACATC TGCTGAAACA AGCTAAAAAA AAAATGAGCG AAGAAAAATA
  Y
  ATTTAATCTC CAAAGAGTAG AGTCACGTAA AGGTTCATCT CTTGAAGCAG TTTCTCTTGT
  GGGGCCTTGT AAGTGAAACC CAAAAGACCA GGCTGTTCTC CAAGACTTAC AAGCTCCCCA
  ACACAGCAAA ACGTTAGAGA GGACTTTATA AATGAGCCAC ACTGTAAGTC ACAGAGTAAT
  AGAATAACCC CGGAGCTAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46935227	NES10819887	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	T	C	C	T		T	T	T	C		C
ss135180482	ENSMUSSNP5606529	ENSEMBL	ENSEMBL_Sanger	f	SNP		C				C
ss320766329	CHEV_3_52787406	CHEVERUD	SCREENING_POP	f	SNP									T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30317367					SNP	T	C	T	T	T	C	C	T	T	T	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46935227	NES10819887	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52890905 () rs orientation: forward

Symbol	Name	Function Class
Cog6	component of oligomeric golgi complex 6	Intron
Gm65168	predicted gene, 65168	within coordinates
Rr576615	regulatory region 576615	339 bp proximal
Rr576616	regulatory region 576616	1947 bp proximal