rs30317312 SNP Detail

Summary

• ID
  rs30317312
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:146128930 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCATCAGCT CCTGAAGAAT
  GAGAAAGATG AGGTGAGTTG TCTGCTCCTG TGTCTGAGGT CAGCTCTTGG TTTTTGAAAT
  TTGACATGTG ACATGATGGT CAATTTGCTT TTAAACAGAA CTGTCGATGC ATCCTGTGTG
  ACACTGGCAT GGTGGGTGGG CAGTCCTGTG CCCGTCTTCT GCCCCTACCC CAAGACTGTT
  S
  ATTTTCTTAG TAATACCTGC CAACAGGTAG TGTCCCTTGT ACTGCCTGTC CTTCCTGTAC
  TGAGAACCAC GCCCTTTCTC TCCAGTATCC TTTTGTGTCT ACCGAGTTGT CGCAGGTGCC
  AGGCTCCATG CCTCACCCCT CTGCCTCTGC CACCTCATTT CAGCAAGGGC TCGCTCAGCA
  GTGGAAGCGT GCTCATCTCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45417782	mCV23229524	ABI	CRAMUS_MOUSE	f	SNP	G	C	C
ss136044162	ENSMUSSNP6748447	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		C
ss321010294	CHEV_3_146086139	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30317312					SNP	G	C	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146128930 () rs orientation: forward

Symbol	Name	Function Class
Rr587026	regulatory region 587026	718 bp proximal
Ssx2ip	SSX family member 2 interacting protein	Intron