rs30316847 SNP Detail

Summary

• ID
  rs30316847
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:36119576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATACATAAA ATAAATAAAT
  CATAAAAAGA AACAAACAAA CAAACATGGT GTTTATAGTT TCATAGGGTA GGTCACCGAG
  CCAAGGGAAA TGCCTTGCCC TGGGAGTGGT GAAGAAAGCA AGTGTCTGAA GACTGTGGCC
  AATAGGGGCC AGACTAGGGG GGTGCACAAC ACAGGGAGTG GTAGATTCAA GAAAGGAGGA
  R
  ACAGCATGCT CTTAGTGCTT CATGCAGTCT CCCATACAAA ATGATACCAC GCCACTCACA
  TATTTAAGAG AATTAGGCAG AAGTGGGTTA GTAAAATAGG TCCCTTGTCA TTTTGTTATA
  CCCATTTAGC AATATTCTAA GTCCTACATT AAGTGAGATG AGAATAACAA AAGTTGTACT
  TCTAGGTTTA TTTGATGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45418632	mCV22322124	ABI	CRAMUS_MOUSE	f	SNP	G	G	A				A		A
ss60387999	NES15892821	PERLEGEN	MM_PANEL2	f	SNP			A	G	A	A		A	A	A	A	A	A	A	A	G
ss134777625	ENSMUSSNP3203905	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30316847					SNP	G	G	A	G	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60387999	NES15892821	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36119576 () rs orientation: forward

Symbol	Name	Function Class
Acad9	acyl-Coenzyme A dehydrogenase family, member 9	552 bp upstream
Cpgi13079	CpG island 13079	441 bp proximal
Rr397642	regulatory region 397642	580 bp downstream
Rr575304	regulatory region 575304	365 bp distal
Rr575305	regulatory region 575305	225 bp distal
Rr575306	regulatory region 575306	45 bp distal
Rr575307	regulatory region 575307	62 bp proximal
Tssr28859	transcription start site region 28859	557 bp upstream
Tssr28860	transcription start site region 28860	619 bp upstream
Tssr28861	transcription start site region 28861	637 bp upstream
Tssr28862	transcription start site region 28862	684 bp upstream