rs30316768 SNP Detail

Summary

• ID
  rs30316768
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152591042 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGTTTTATT TATTTGGTTG
  CTCAGAAAAG AGGGTGACAG GGCCAGAATT GTATGCTGGG AAAGGCTAAT GGGCTGCAGG
  AGAGGGTAAA CGCACGAAGG TGGGGAGGAC CTTGGAAGGC TCTTCAGTGT TCTTGGAAGA
  CGATGCTAAT AGGATGTGAG AGAGAAGGGC CAGAGGTAGA GAGAGCTCGG AGGCAAAGCT
  R
  AAAGGCATGG TGATTTACTT GAAAAACAGT CACTGGAACT CCAGATATTG GGACAGAGTA
  TCAGGGAAGG AAGGCAGAGG TGACTTGTCT TCACTGTGTA CTTGAGGCCA CCCATGTAGG
  GTGTGAAGGG TGGTGATCTA CCACTGGATA GCCCTGGGGA AAGTGACCCT GACACACTGC
  CAGGCATTGC TGGTCCCTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45417976	mCV25265502	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A	A
ss136104369	ENSMUSSNP3744037	ENSEMBL	ENSEMBL_Sanger	f	SNP			G		A
ss321029034	CHEV_3_152548369	CHEVERUD	SCREENING_POP	f	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30316768					SNP	G	G	G	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152591042 () rs orientation: forward

Symbol	Name	Function Class
D3Mit322	DNA Segment, Chr 3, Massachusetts Institute of Technology 322	1147 bp proximal
Rr587620	regulatory region 587620	1453 bp proximal
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	Intron
Tssr32421	transcription start site region 32421	1112 bp downstream
Tssr32422	transcription start site region 32422	1039 bp downstream