rs30316218 SNP Detail

Summary

• ID
  rs30316218
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:113306150 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCCACAAGG CAGAAGCCTA GTGATTTCTC GACCCGAGCA
  GTCCCTTATT CTTCCAGGTC CCCCTGGAGC CTCAAGGTGT AGTGTCTGAT GTGGAGGGAT
  K
  CGAGGTGTGT CCCCAGGCTC CGACCTTTCT GCTCTCCAGG TGTGAGACTG CTGAGACAAG
  ACCCCACTGA GTGCCTTTTC TCTTTCATCT GTTCCTCCA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss45915343	mCV24112072	ABI	CRAMUS_MOUSE	f	SNP		T	T					T	G
ss51842349	NES14762157	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T			T	T		G	G		T
ss133564355	ENSMUSSNP4408549	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						G
ss321910507	CHEV_6_113279183	CHEVERUD	SCREENING_POP	f	SNP												G			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs30316218					SNP	T	T	T	T	T	T	T	T	G	T	T	G	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51842349	NES14762157	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113306150 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17839	CpG island 17839			1821 bp distal
Ogg1	8-oxoguanine DNA-glycosylase 1			Coding-NonSynonymous
				Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr636491	regulatory region 636491			1469 bp proximal
Tssr58196	transcription start site region 58196			1948 bp downstream
Tssr58197	transcription start site region 58197			1925 bp downstream