rs30316098 SNP Detail

Summary

• ID
  rs30316098
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146050051 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTTTAAAAA ATAAAATCTG AAGTGGGTGG
  AGTAAAAAAA AATCATACCA CTAGTAAAAG AGACATCAGG GCTTTGGGCC TTGCGGGAGG
  AAGCTTCCAG AAGGCTGAGG CAGCCCACTT GACTGTATGT GAGAAGATGT AGACATCTGG
  Y
  TTCCTCCCAC TCTTTTTTCA TTGGATCTCA TATCTCTGTA AATCATCAGA AAGCTTTCTG
  TGGCTTTTTT TTCCCCAGTA TTTCCACTAT AACACTTCCA CCTCTTACAG TGTCCTACAT
  CACACAACAT CAACAGTTGA TTTCCCAGAC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45417569	mCV24236769	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss136043400	ENSMUSSNP2964206	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
ss321010014	CHEV_3_146007260	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30316098					SNP	C	T	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146050051 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13916	CpG island 13916	989 bp proximal
Rr587007	regulatory region 587007	1804 bp distal
Rr587008	regulatory region 587008	257 bp distal
Rr587009	regulatory region 587009	462 bp distal
Rr587010	regulatory region 587010	795 bp proximal
Rr587011	regulatory region 587011	1101 bp proximal