rs30315807 SNP Detail

Summary

• ID
  rs30315807
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:56882442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGCTATAGG CAATTACATA
  TATATATGCT TACATTAGAG TGCTTGAAAA ATATATTCCT AAGACTGCTT GCCTCGTCAG
  AGGGCTCAAC AGATATAAAG CCTGACAACA CAAGTTCCAT CCCTGAGACT CAAAACAAAA
  CAAATCAAAT CCCAAATCTC ACAGTTGTTC TCTGATCTCC ACACCATGAC AAGTGCTTGT
  R
  GCCACTCAAA CACACATAGC ACACACAGGC ACATACAAGA AGCATAAACA CAAAACAGTA
  ATGCCACCGA AAGTACTGAA TTAATGGCTC TACTTCTAGA TACGTCCAAC AGGACTGACG
  CACATATGAG CACATATAGG CTAGCAGCAC ACATAAGACT TGCACAGGTT CAAGCCAGAA
  AAGGTCTCAC CCCTAACCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45915538	mCV23495527	ABI	CRAMUS_MOUSE	f	SNP		A	G					G
ss60887156	NES15965987	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		A	G	G	A	A	G	A	A
ss133233782	ENSMUSSNP4488425	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30315807					SNP	A	A	G	G	G	G	G	G	A	G	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60887156	NES15965987	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56882442 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm3793	predicted gene 3793			454 bp downstream
Gm53332	predicted gene, 53332			within coordinates
Nt5c3	5'-nucleotidase, cytosolic III			Intron
				Noncoding-Transcript-Variant
Rr631119	regulatory region 631119			1967 bp distal
Rr631120	regulatory region 631120			841 bp distal
Rr631121	regulatory region 631121			within coordinates
Rr631122	regulatory region 631122			734 bp proximal