rs30315335 SNP Detail

Summary

• ID
  rs30315335
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122067491 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CCATCTTTCA TCCAACAAAA CAAAAACTAA AACACCTCAG CCAGGTGCTG TGGCCCATGG
  ATCCCAACAC TTGGGAGGCA GATGGATATC TGTGAGTTCA GGATCAGGCT GGTCTAAATA
  GTGAGTTCTA GGGCAGCCAG GGCCATGTAG AGAGATCTTG TCTCAAAACA AAAATCCTAA
  AACTCTTTTG ATTCTGGCTA GTCTCTTACT TCCATTGTAA AAAAACAAAA AACTTTAATC
  CCCGTCCTTC ACAACGTCTT TCACCTTTTT TATTTAAAAA AAAAAAAAAA AAAAAAAAAG
  R
  CGTACTTCAA ATCCCGAGAC ATTTTAGTTA AATCCCACAG CTTTCTAATT ATTCTCCGAA
  AACTTGGGTG CATTTAACAT ACATCCTTGT ATCCCAATCA AATATCGGAA TCTCATTTAT
  TAAGTTATTA AAATACTGTT TTCTAAAAGG ACTAAATAAA GTCTCCTTTG GCTTCCGTAA
  AGACTTACGC CAAAGATCTC ACAATTA                                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J
ss45417173	mCV22781005	ABI	CRAMUS_MOUSE	f	SNP	A		G
ss135737963	ENSMUSSNP6865681	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J
rs30315335					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122067491 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13766	CpG island 13766	181 bp proximal
Dnttip2	deoxynucleotidyltransferase, terminal, interacting protein 2	554 bp upstream
Gm17494	predicted gene, 17494	within coordinates
Rr584273	regulatory region 584273	56 bp proximal
Rr584274	regulatory region 584274	557 bp proximal
Tssr31491	transcription start site region 31491	529 bp upstream
Tssr31492	transcription start site region 31492	1711 bp upstream