rs30314968 SNP Detail

Summary

• ID
  rs30314968
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152656235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGTCTCTC TTACTAGGAG
  GCTTCCACAC AGACAGGAAG CGTAGGGTGT GTTAGCTACT TTGTGACTGC TGTGATAAGA
  CCACAGCCAA AAGCAGCTTG AGGAAGAAAG GGCTTATTAA AACTTCAGAT CATCACTTAG
  AGAAGCCAAG GTAGGACATC AGTGCAGGAA CCCGGAAGCA GACCTTAAAC TGGAGCCTGT
  R
  TAAAGGTGCT GCTCACTGGC TGGCTCGCTC AGTTTGATTT CTAATACCAT CCAGGACCAA
  GTGGAGCACC ATGCACCATG GACTGGACCC TCTCACATTC ACTAATGAAG AAAATGCATT
  CCCGTAACTG AGAGCCTTTC CCAAATGACT CTGCCTTGTG TGTCAAGTTG ACAAAGCCTA
  ACGAACATAC AGGGTAGCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45417955	mCV24026813	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss136105116	ENSMUSSNP5173369	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
ss321029346	CHEV_3_152613562	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30314968					SNP	G	A	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152656235 () rs orientation: forward

Symbol	Name	Function Class
Gm16213	predicted gene 16213	within coordinates
Rr587634	regulatory region 587634	8 bp distal
Rr587635	regulatory region 587635	507 bp proximal
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	Intron