rs30314496 SNP Detail

Summary

• ID
  rs30314496
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:108040438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGAAGGTC ATGCACCTGA
  CCTGGCTATG CCAAAGGCTG AAGGAGGAGG ATCCGTTAAA CCTACACATC GAGTACAGGC
  CTTGGCAAAA TATCAAGATC CTATCTCAAA ATAATGATAA CTTCTGGATC CTGGTTGTCT
  AGTTAATGTT TCTATTGCTG CAACAAAACC CCATGACAGA CGATAAATCA AGATAGAGTC
  W
  CTTGTCACCA AGCTGAAACT AACCTGTCTA TGTAACCTTT TGCAGAAATA AAGAACTAAA
  GAGATAACAG ACAAATATCC CAGGATAATA AAATTCCTCT GCCTTAATCT TAGCACACAA
  ACATTACTCT GGTGCTAAGC AATGATTTAT TTTCCTACTG TTCTGTATTC CTGCCCATGC
  CTTACAGGGA TAGAGTAACT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45918098	mCV24060739	ABI	CRAMUS_MOUSE	f	SNP		T					A		A
ss51822029	NES14764758	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	A	T		A	A	A	A		A	A	T	A		A
ss133494190	ENSMUSSNP5430598	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss321891472	CHEV_6_108013471	CHEVERUD	SCREENING_POP	f	SNP												T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30314496					SNP	T	T	T	T	A	T	A	A	A	A	A	T	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51822029	NES14764758	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108040438 () rs orientation: forward

Symbol	Name	Function Class
Gm66771	predicted gene, 66771	within coordinates
Rr399804	regulatory region 399804	1416 bp upstream
Rr399805	regulatory region 399805	1722 bp upstream
Rr636028	regulatory region 636028	747 bp proximal
Rr636029	regulatory region 636029	1495 bp proximal
Rr636030	regulatory region 636030	1821 bp proximal
Setmar	SET domain without mariner transposase fusion	1568 bp upstream
Tssr58052	transcription start site region 58052	1558 bp upstream