rs30313690 SNP Detail

Summary

• ID
  rs30313690
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121516163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATCCAAAGA CACAGATATT TACATTACAG TTCATAACCG
  TAGCAAAATT ACAGTTATGA AGTAGCAATA AAAATAATTT TATGGTTGGG ATCACTACAA
  Y
  ATGAGGAGCT GTGTTAAAGG GTCGCAGAAT TAGGGAAATT GGAAAAGAAG GGATAAACTG
  GACAGTCAAC CAGGAGTGAC AAGAAATCGT TTGATACAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45417361	mCV23475905	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss135727509	ENSMUSSNP6659907	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T	C
ss320905160	CHEV_3_121425432	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs30313690					SNP	T	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121516163 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13760	CpG island 13760	452 bp proximal
F3	coagulation factor III, tissue factor	1023 bp upstream
Gm43823	predicted gene 43823	within coordinates
Gm64338	predicted gene, 64338	within coordinates
Rr584147	regulatory region 584147	1420 bp distal
Rr584148	regulatory region 584148	595 bp distal
Rr584149	regulatory region 584149	136 bp proximal
Rr584150	regulatory region 584150	210 bp proximal
Rr584151	regulatory region 584151	990 bp proximal
Rr584152	regulatory region 584152	1034 bp proximal
Rr584153	regulatory region 584153	1206 bp proximal
Rr584154	regulatory region 584154	1218 bp proximal
Tssr31453	transcription start site region 31453	1001 bp upstream
Tssr31454	transcription start site region 31454	1042 bp upstream
Tssr31455	transcription start site region 31455	1066 bp upstream
Tssr31456	transcription start site region 31456	1087 bp upstream
Tssr35426	transcription start site region 35426	881 bp downstream