rs30313284 SNP Detail

Summary

• ID
  rs30313284
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132791065 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGGATACGC TTACAATGAG CAACCTTGGC ACTATGAGAT
  AGAAACTGAG TACTCTTTTA CACCCGGTTC CTGGGCCATC ATTTCTCGGT CTCTCTGTAG
  W
  ATAAGCACAG AACCTGCTTC ATGCCATTTC CACTGCTGCT GAGTCACCGT CACTTCAGTT
  GCCCTCAATG GCCTCTGTCC CTCCTGCCCC ACAACTGTT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss45417730	mCV25027756	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	T
ss135916501	ENSMUSSNP6098015	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs30313284					SNP	A	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132791065 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gstcd	glutathione S-transferase, C-terminal domain containing			Intron
				Noncoding-Transcript-Variant
Rr398027	regulatory region 398027			624 bp upstream
Rr585498	regulatory region 585498			635 bp proximal
Rr585499	regulatory region 585499			741 bp proximal