rs30312733 SNP Detail

Summary

• ID
  rs30312733
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151476752 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACAGCAGT AAAACCCTAA
  CGAAGACAAA TATAGATCGC ACTTGAGCCT GTGTCAATAA ATATCAAGAA GCCACTAAAG
  AGGATGGGGA AGGAAAGAAG TAAGCTACAA CAGAGCTACA GTGACTGTGC ATCCTACTGG
  CAAGAGCAAA AGATCTATAA AATGTTGCAG GAAATTAATT AAAATTTGGT GTTAGAAAAA
  Y
  TTCATAGTAA TAAATTTGGT CAGCAAGATG TAGAGCTTTG ACGTAAGACA CTGTGACAGT
  AAAATACCAC AGATACAGCT ATTGCAACCG CAAAGGCTTA CATAGCTGTA CAGGCTGCGG
  GGCTAGACCA CACCTGCTGT GGAGTCTGTT ACCCAAGAAG CTGTCCCTTG CAGCTTCTCT
  CCACTGCCCT CTGCTGGCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45417353	mCV24030319	ABI	CRAMUS_MOUSE	f	SNP	C	C		T		T
ss61100551	NES16600272	PERLEGEN	MM_PANEL2	f	SNP			T		C		T		T	T		T
ss136098006	ENSMUSSNP517609	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C				T
ss321026838	CHEV_3_151434079	CHEVERUD	SCREENING_POP	f	SNP								C			C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30312733					SNP	C	C	T	T	C	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61100551	NES16600272	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151476752 () rs orientation: forward

Symbol	Name	Function Class
Rr587415	regulatory region 587415	56 bp distal
Rr587416	regulatory region 587416	70 bp proximal
Rr587417	regulatory region 587417	181 bp proximal