rs30312212 SNP Detail

Summary

• ID
  rs30312212
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151771876 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGCTCCA GGGGAGAGTA
  TCTCTTGCCC AAAGTGTTAC AGCTCTATAC AGCAGACACT CAGACAGTCC TTGACAAAAT
  AACGAGTACT TTATTCCTGT CGACAGGGTC TTATATACAC TTTGGGGTGG ATTGGGGTCT
  AAGAGCAGAT GCTTTCTGTT GGCTTACCCC GAGATGTTAA GGATGCCTCA TCTGCCTGTG
  M
  ATGGTCACCG TCCTCTCCGT GGGGTGTCAC AGTCATGTGT TCTAGCACAG AAATCTGGTC
  CAGAGTAGAT GAAACACCTA CCATATGCAG GTATGAGGGT CCCGGGGTTT CTGAATCCAC
  TCGACCTTAC CAAGTTGTCT GGCATGGTCC GCTGCACCAC AGAGGACTTA GGTCAGACCC
  ATACAGGCAG GAGCCCTGAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45417825	mCV24211751	ABI	CRAMUS_MOUSE	f	SNP	C	C	A					C		C
ss51060936	NES13431228	PERLEGEN	MM_PANEL2	f	SNP	C		A	C	A	C	A		C	C	C	C	A	C	C	C	C
ss136100478	ENSMUSSNP2717592	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30312212					SNP	C	C	A	C	A	C	A	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51060936	NES13431228	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151771876 () rs orientation: forward

Symbol	Name	Function Class
Gm64437	predicted gene, 64437	within coordinates
Rr587440	regulatory region 587440	499 bp proximal
Rr587441	regulatory region 587441	606 bp proximal