rs30312143 SNP Detail

Summary

• ID
  rs30312143
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17751318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTTTTTTT GTTTTTTGTT TTTGTTTTTT TGTTTTTTTT
  TTTTTTGTTT TTATTTTTGC TTTTACTTAG AACCCTTTTT CTTTGACGGA GGACTACTTT
  Y
  TATCTCTTGC TTGTGTCTAG AAGCCCACAG GTACTCGGGC TGCCAGTGGG CATTTAGGAT
  TAGAAATGGC CGCCGTCTTT TAGATGAGGA GATAGTGTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45916594	mCV22806947	ABI	CRAMUS_MOUSE	f	SNP		C					C		T
ss47815190	NES11711931	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C		T		C	C		T	T	C	T		T
ss133022001	ENSMUSSNP3014483	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							T
ss321756216	CHEV_6_17701319	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30312143					SNP	T	C	C	C	C	C	C	T	T	C	C	C	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47815190	NES11711931	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17751318 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr626854	regulatory region 626854			489 bp distal
Rr626855	regulatory region 626855			within coordinates
St7	suppression of tumorigenicity 7			Intron
				Noncoding-Transcript-Variant
Tssr55098	transcription start site region 55098			1747 bp downstream