rs30312075 SNP Detail

Summary

• ID
  rs30312075
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:107511389 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGAATTCTT TTACCCACTG AACTGAAATA TGGCCCCTAA
  GAAGCAGAGA AAATAGGTGC TGACTTGGAA AACACATCAG AGGTCCTGCC CACCCTAATT
  W
  TGGAGCACCT GTTAAAAATA CAAATGCATT AGGTTAAGGC ATCTAGTTTT GAGAGCTATG
  GAGTAGAGCC CTCTTTTCCA GTAGCTTCTT ACTTTCCAT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45915896	mCV23133325	ABI	CRAMUS_MOUSE	f	SNP		T	T					T		A
ss51827525	NES14777358	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		T	A	T	T	A	T	T	A	T
ss133484750	ENSMUSSNP917047	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30312075					SNP	T	T	T	T	T	T	T	T	T	A	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51827525	NES14777358	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:107511389 () rs orientation: forward

Symbol	Name	Function Class
Lrrn1	leucine rich repeat protein 1, neuronal	Intron
Rr636003	regulatory region 636003	69 bp proximal