rs30312003 SNP Detail

Summary

• ID
  rs30312003
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:56881044 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGCAGGGG ATTAGGAAGA
  GTCGGAGGCA GGCCCAGGCT AAATGAGATA CTGCCTTAAA AGCAAACAAA CAGAACAAGG
  GACAGTAACA AAACATAAAA CTTCAGGACG GAGGACAGGT GGGGTGGGGG TGAAGCCGAG
  AGGCAGGCTA GTTAGCATGT ACAGAGCTCT GGGCTCTACT CCAAGAACCA CAAACAACAA
  R
  ACAGTGTCAG AGAGGTGAAC GCACTGTGAT ACACATGAGA CACAGACATA TGAAACTCTT
  AGAAACGAAT GGTGCTGTAC CCGTTGAGTC AAGCCTATAA TCCCAGGACT TGGGAGGAAG
  GAACAGGGGG CCACTGTCCC AGATCAGGCA ACAGTAAGAG CCAGCCTTAA AAACAATAAA
  ATAAGATGTT GTACGTGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45915504	mCV23495482	ABI	CRAMUS_MOUSE	f	SNP		A	G					G		G
ss60887167	NES15965973	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		A	G	G	A	A	G	A	A	G
ss133233759	ENSMUSSNP2417785	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30312003					SNP	A	A	G	G	G	G	G	G	A	G	G	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60887167	NES15965973	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56881044 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm3793	predicted gene 3793			1852 bp downstream
Gm53332	predicted gene, 53332			within coordinates
Nt5c3	5'-nucleotidase, cytosolic III			Intron
				Noncoding-Transcript-Variant
Rr379412	regulatory region 379412			1239 bp downstream
Rr631116	regulatory region 631116			1683 bp distal
Rr631117	regulatory region 631117			971 bp distal
Rr631118	regulatory region 631118			887 bp distal
Rr631119	regulatory region 631119			569 bp distal
Rr631120	regulatory region 631120			within coordinates
Rr631121	regulatory region 631121			832 bp proximal
Tssr1860	transcription start site region 1860			1915 bp upstream