rs30311923 SNP Detail

Summary

• ID
  rs30311923
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151895622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAACTGCAG AGAAGAGTCA
  TGGGACCTAT TAGGAGGCCT AGGCATAACA GTGTTCGATT TGTAGCAAGA CTTCAGAGTT
  ATAGAACAGA GTTATAGAAC AGAGTTATAG ACCTTTAAAC AGGTTAACTC ACAAGTAACT
  TCTGTATCTT TAGGACCCAG AAAACAAAGA GGTGCAGCGG ACTAACTGCA TGGAAGAGAA
  Y
  ACTGAACTAG AAGAAGGCTA TTACACTGAA TAGTTAAGTT GAAACACATC AACAACTGTC
  CACATCCAGA GTAAATTAGT GAGTAAGAAA TAATCAACAA AGTAAAGAAG GAAGAAATGA
  AGGCTAGAAA ACCAGAACCC TCTAAAGGTG TCCTTTGAGG AAAAGTTGTA ACTTTTATAT
  TTTAAAACTG CATTTCATTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45418120	mCV22364111	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
ss136101291	ENSMUSSNP6101083	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
ss321028359	CHEV_3_151852949	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs30311923					SNP	C	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151895622 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnajb4	DnaJ heat shock protein family (Hsp40) member B4			Intron
				Noncoding-Transcript-Variant
Rr587480	regulatory region 587480			277 bp distal
Rr587481	regulatory region 587481			1125 bp proximal
Rr587482	regulatory region 587482			1841 bp proximal
Rr587483	regulatory region 587483			1854 bp proximal