rs30311915 SNP Detail

Summary

• ID
  rs30311915
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:57342362 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTAC CTCAACTTTA TTCTCACAAC
  Y
  AACCAAGTCG AGGTGGCTGT CATCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45418111	mCV24479629	ABI	CRAMUS_MOUSE	f	SNP		T	C					T		C
ss46977153	NES10795789	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	T	T		T	C	C	T		T	T	T		C
ss135201275	ENSMUSSNP2662112	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
ss320780611	CHEV_3_57238863	CHEVERUD	SCREENING_POP	f	SNP													T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30311915					SNP	T	T	C	T	T	T	T	T	T	C	C	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46977153	NES10795789	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57342362 () rs orientation: forward

Symbol	Name	Function Class
Rr577095	regulatory region 577095	298 bp proximal
Rr577096	regulatory region 577096	1610 bp proximal
Tm4sf4	transmembrane 4 superfamily member 4	Intron
Tssr29185	transcription start site region 29185	1138 bp downstream