rs30311911 SNP Detail

Summary

• ID
  rs30311911
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52947995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGACTCTGC CAAATGTCTC
  CCAGGAACTA TTCTTTCCTC TTCTCAAGAC TATTGTGATA AACTTAATGT GTATTACATC
  GCTTTCCTGG GAGGCTCATT ACCTGTATCC TATTCCTACA AAGGAAAGGC TTGGAATCAA
  TCACTTAAAA CCTTTCAAAC AATCCTGAAA CAACCTGTCT CCAGCTGATG CCGCCCAATT
  M
  AATGGTGCAC TCGAAATTTT ATTATGAAAT ATATTCCTAC CCAGTTATTA CTTCCAGCTG
  CTTTGAAAAA GGCACATCAC AAAAACTGCA TCTAGGCAAG TATGTACTTC AAAAGTTGCT
  GGTCCCAGAT GGCAGCTTCC TAAAATAACT GTCCTCTGTG GAGACTCCAG AGGTCAGTCA
  GTCACCCACA GAATACGGCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45417527	mCV23032409	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	C	C
ss135180731	ENSMUSSNP60980	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30311911					SNP	C	C	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52947995 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13160	CpG island 13160	514 bp proximal
Gm42901	predicted gene 42901	within coordinates
Lhfpl6	LHFPL tetraspan subfamily member 6	973 bp upstream
Rr576626	regulatory region 576626	61 bp proximal
Rr576627	regulatory region 576627	865 bp proximal
Rr576628	regulatory region 576628	1020 bp proximal
Rr576629	regulatory region 576629	1564 bp proximal
Rr576630	regulatory region 576630	1579 bp proximal
Rr576631	regulatory region 576631	1881 bp proximal
Tssr29102	transcription start site region 29102	943 bp upstream
Tssr29103	transcription start site region 29103	1056 bp upstream