rs30311349 SNP Detail

Summary

• ID
  rs30311349
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100455092 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGGTGTC ATTTTAACAT
  TAAGAGCATA AAGAGTCCTT GTCTTTATCT AGGAAGGCAG AGGGTGTCTC CTCTAACCAC
  GGGTCCTTAT CACTGCCTCA GGCTTGTTCC AGCTCTTAGC AAGTCTAGAT AGATCACGCC
  CTGATGACGT GTCCTAATTA TTATTATTAC TCCTATTTGG AGCTTGGTGT TAGGGATGGA
  W
  CTCCTAAGTA GAATGCTAAG CAAGCACTCT AGCATTGAGC TCCACCCTCC GGTCAACTTC
  AGCGAGCTTA AGAACCTAAA ACCCTTCCAC AGGGGCGGGG CTCTTACATT TCCCGTGTCA
  TTAGCGTTTA GTTATGCCTT GCATAAATAG CATATCACCG TTTTATTTTG ACCTGAAACT
  TTCTGTCTTT ATTCATTTTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45416080	mCV23818001	ABI	CRAMUS_MOUSE	f	SNP	A	T	A	A
ss135540177	ENSMUSSNP4887629	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T		A
ss320849127	CHEV_3_100351699	CHEVERUD	SCREENING_POP	f	SNP					T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30311349					SNP	A	T	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100455092 () rs orientation: forward

Symbol	Name	Function Class
Gm54212	predicted gene, 54212	within coordinates
Rr581870	regulatory region 581870	within coordinates
Rr581871	regulatory region 581871	36 bp proximal