rs30311134 SNP Detail

Summary

• ID
  rs30311134
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146083807 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATCTCTGC GATTAGGATG
  CTCTGGGGAG CAATTAAGTC TCCTGAAGAT TCTGAGGTTC AACAGAAGCG GAAACCAGCA
  TCTTGTCCTC TGGAAGGATT GATTCCCAGA GAAGCAATGA TCTATAAGGG TCTCATGTTG
  GGGTACAGAG AGGCAGTGGT CTAGAAAGGT CTAGAAGGGG CTCATGGATG TAACACTGGT
  R
  AGAGAAGGTG TGACCAAAGG GGACTCTGGT TGACCTAGGT TTTATTAGAC AACCCGACAA
  CAGAGAAAAG AGAGAAGAGC AAGGTGGTGA GGCCCAGTGG TTGGCTCAAC AGATGGTCAT
  CACGTAGACT GAAAATGAGA TAGACTGCCC CCACCCCCAA TGCTTGTGTC AATGCAAAAG
  TCACATCTCT CATCCTAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45418297	mCV23541892	ABI	CRAMUS_MOUSE	f	SNP		A				G		G
ss47026944	NES10844279	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	A	G		G	G	G	G		G	G	G	G		G
ss136043583	ENSMUSSNP3763003	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						G
ss321010078	CHEV_3_146041016	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30311134					SNP	G	A	G	A	G	G	G	G	G	G	A	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026944	NES10844279	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146083807 () rs orientation: forward

Symbol	Name	Function Class
Gm10636	predicted gene 10636	within coordinates
Rr375875	regulatory region 375875	1356 bp upstream
Rr587015	regulatory region 587015	390 bp distal
Rr587017	regulatory region 587017	1636 bp proximal
Tssr36032	transcription start site region 36032	890 bp downstream