rs30310451 SNP Detail

Summary

• ID
  rs30310451
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:94938100 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAA AAGCCAGAGA GAGAAGTAAA
  R
  ACTAACTCGC CCGGTGCACA AGGTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45415679	mCV24557747	ABI	CRAMUS_MOUSE	f	SNP		G				A		G
ss46771181	NES10633963	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	A	G		G	G	G		G	G	G	G		G
ss135509600	ENSMUSSNP2121919	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						G
ss320841077	CHEV_3_94834711	CHEVERUD	SCREENING_POP	f	SNP										G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30310451					SNP	A	G	G	A	G	A	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46771181	NES10633963	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94938100 () rs orientation: forward

Symbol	Name	Function Class
D3Mit76	DNA segment, Chr 3, Massachusetts Institute of Technology 76	1757 bp distal
Gm65650	predicted gene, 65650	within coordinates
Gm65664	predicted gene, 65664	1982 bp upstream
Psmd4	proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	1899 bp downstream
Rr580791	regulatory region 580791	1802 bp distal
Rr580792	regulatory region 580792	1257 bp distal
Rr580793	regulatory region 580793	611 bp distal
Rr580794	regulatory region 580794	1484 bp proximal
Tssr30488	transcription start site region 30488	1995 bp upstream