rs30309639 SNP Detail

Summary

• ID
  rs30309639
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:34071971 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTAGG AGTCTGTACA TCTCCTCCAG
  S
  AGGAGGAAGT CAAAGTCAGT TGTCT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45416623	mCV22842342	ABI	CRAMUS_MOUSE	f	SNP	G	C	G
ss134762047	ENSMUSSNP626731	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss320700959	CHEV_3_33916744	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30309639					SNP	G	C	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34071971 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13066	CpG island 13066	1632 bp proximal
Gm43077	predicted gene 43077	within coordinates
Rr575095	regulatory region 575095	1446 bp proximal
Rr575096	regulatory region 575096	1966 bp proximal
Tssr32968	transcription start site region 32968	1975 bp downstream