rs30309397 SNP Detail

Summary

• ID
  rs30309397
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:8417352 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTATCACTC CTGTGTTCAA
  TGGCAGAATT GAATTTGCCT GCCTCAGGAC ATCTGGATGC AGAGGGGTAC AACATAGCTG
  CTTTCACGTT TGTGCATATA TGAAAATGCA CAGTGTGAGC CAGCAAGATG GCACAGTGGG
  TAAAGGCACT TGCTGCCACA CTGGAAGACA GAAGTTTAGT CCCTGGAGAC CACGTGATAT
  Y
  AGGAAAGAAC TGACCTCCAC AAGTTGTCCT CTGACCTACA AAACACCGTG GCATGTGTGT
  GTTCCTGTTC ATTCATCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCA CACACACACA
  CACACACACA CACACACACG AAATAAATAA ACATAAAAAC TTTGTTTAAA TGTACAGCTT
  ATATTTACTA GTTATAACGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45914680	mCV23998870	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss132968459	ENSMUSSNP2034271	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs30309397					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8417352 () rs orientation: forward

Symbol	Name	Function Class
1810015A16Rik	RIKEN cDNA 1810015A16 gene	1570 bp downstream
Gm45062	predicted gene 45062	Intron
Rr626392	regulatory region 626392	154 bp distal
Umad1	UMAP1-MVP12 associated (UMA) domain containing 1	Intron