rs30308589 SNP Detail

Summary

• ID
  rs30308589
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116407158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGGA GTTTACCCGC ATGCCTGGGC
  Y
  CCCCTCTTTT TTTTTTTTTT TTTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45416800	mCV24030736	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C	C
ss135670388	ENSMUSSNP1588919	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		C
ss320895864	CHEV_3_116316427	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30308589					SNP	C	C	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116407158 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr583752	regulatory region 583752			663 bp proximal
Rr583753	regulatory region 583753			1068 bp proximal
Sass6	SAS-6 centriolar assembly protein			Intron
				Noncoding-Transcript-Variant
Trmt13	tRNA methyltransferase 13			Intron
				Noncoding-Transcript-Variant