rs30308345 SNP Detail

Summary

• ID
  rs30308345
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126389858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATTTTTTT TCTCCATGCT
  AATTTTTAAG CAACAGTGTC AGATATGCTT AACTGTACAC ACGTTCTTGA ACTCTTAAAT
  GGTTTTCCAG ATAGCCACTG AGGGAGTACA CTCCTGTGCC CCTACTTGGC CTGCTCTTTG
  AGAATGCAGG TAAAGAACTC CCACCCTCCC TCTCCCTTCT CCCTCGGCAA CGCGAAACAG
  K
  CTAGGCACGC TCACGTGACG CTAATGACGT CAGCCCCCTC TGGGTCGCGT GACCCACAGC
  CAACCTTCCT ACCGCCCCAC CCCCTCGCCA CTGGCGTGGG ACATCTCGCG AGAAGCCTTC
  TTACTATCAG AACTTGCTGA GGTTACAGGG GAGTTACTCT GGAGAGGAAG GAAGGTGTGG
  CAGAGTGGTG CACTTTTGGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45415060	mCV24012046	ABI	CRAMUS_MOUSE	f	SNP	T	G	G
ss135836835	ENSMUSSNP5771043	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		G
ss320946575	CHEV_3_126299127	CHEVERUD	SCREENING_POP	f	SNP				G	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30308345					SNP	T	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126389858 () rs orientation: forward

Symbol	Name	Function Class
Camk2d	calcium/calmodulin-dependent protein kinase II, delta	mRNA-UTR
Cpgi13785	CpG island 13785	within coordinates
Gm17225	predicted gene 17225	within coordinates
Rr367547	regulatory region 367547	within coordinates
Rr584646	regulatory region 584646	252 bp proximal
Rr584647	regulatory region 584647	677 bp proximal
Rr584648	regulatory region 584648	789 bp proximal
Rr584649	regulatory region 584649	1216 bp proximal
Tssr31566	transcription start site region 31566	117 bp upstream
Tssr31567	transcription start site region 31567	143 bp upstream
Tssr31568	transcription start site region 31568	199 bp upstream
Tssr31569	transcription start site region 31569	604 bp upstream
Tssr31570	transcription start site region 31570	752 bp upstream
Tssr31571	transcription start site region 31571	784 bp upstream
Tssr31572	transcription start site region 31572	893 bp upstream
Tssr31573	transcription start site region 31573	1029 bp upstream
Tssr31574	transcription start site region 31574	1090 bp upstream
Tssr31575	transcription start site region 31575	1206 bp upstream