rs30307742 SNP Detail

Summary

• ID
  rs30307742
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:119743642 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAAATTTT ATAGATAATT
  AAATCTGATT TATGGGGCAG GCTTCCGAGA CAGTAAGAGA GGGAGGGAAG GAAGGAGAAA
  GGGGGAGGGG GCCAATTATT TGAGCTCTGA GTGGGCCCCG CTTTGTGTGT GTAGCCTTCC
  CAGCAGGCAC CCTGCTTGGC AGGGTTGGCA AGGCGGTTTG AAAGCATAAT GAGCTTCAGG
  R
  ATGGGCCTGG CCATTTTTTT TTTTTTTTTT TTTTTTTGGT TTGTTTGTTT GTTTGGGGAT
  TTGCTGATTT GGTTTTCATT TTTAGGCAAG GAAGTTCTCT GGTCCCAGTA ATAGAACCTT
  ATCTTTATTC TGCACTCTCT CGGTTTTCTT CAAGTTATGT CTAAAGCAAA GCACCTAGGC
  CCAGGAGTTT CCACATGCGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45416605	mCV24015481	ABI	CRAMUS_MOUSE	f	SNP	A	A	G					G		G
ss51014242	NES13912223	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		G	G	G	G	G	G	G	G	G
ss135700196	ENSMUSSNP3578939	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30307742					SNP	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51014242	NES13912223	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:119743642 () rs orientation: forward

Symbol	Name	Function Class
Gm65304	predicted gene, 65304	701 bp upstream
Rr583955	regulatory region 583955	712 bp distal
Rr583956	regulatory region 583956	211 bp distal
Rr583957	regulatory region 583957	790 bp proximal