rs30307712 SNP Detail

Summary

• ID
  rs30307712
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:119742340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAAGCAA TGTACATAGT
  CAATGAGACA GTCGTTCCTC CTAAAAATTC TGTAAGTGGG CCTTCCCTGA CATGATGGGC
  TCAGGACAGA ACCTTGTCCA ACAGTCCCTT TTGCTTATCC ATTGTCTTCT TTTCCCTTCA
  CACACCTTTA TTAAAAAAGA AAATCCCACC TCCCAAGGTT TGTGGAATGG AATGAAACCC
  K
  GGAGGCAGTC AGTGTCTCTA GAAGGCAGAG AGCTGGCTCC TCAGGCGGGT GTCCTGGTTG
  TTATTAGGTG TGTCTTGTCT CCACCTCCAT CCCCCTCCTT CAGGCTTCAT CTTTCTTTTC
  TAGCACAATG AGGATTTAAG AGAGACAGGA CAAGAATCCC CTCCTAAGGC TGGGTGGCCA
  GAAAAAAGTT TTAGGCTTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss45415366	mCV24015494	ABI	CRAMUS_MOUSE	f	SNP		G	T					T		T
ss51014250	NES13912274	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	T	T	T		G	T	T	T	G	T	T	G
ss135700187	ENSMUSSNP2540912	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30307712					SNP	G	G	T	T	T	T	T	T	G	T	T	T	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51014250	NES13912274	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:119742340 () rs orientation: forward

Symbol	Name	Function Class
Gm65304	predicted gene, 65304	within coordinates
Rr583954	regulatory region 583954	1124 bp distal
Rr583955	regulatory region 583955	6 bp proximal
Rr583956	regulatory region 583956	591 bp proximal