rs30307408 SNP Detail

Summary

• ID
  rs30307408
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:138613545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGTCTTGCT GAGTCCCAGT TTTGTTAAGA TAGGCTCTTG
  GTGTATATCT TGGGTTAGTT AGCTTTCAGC TTGCTGTGTA ACTCATGCTG CATTTGAACT
  Y
  ATTCCCCTGG CTTCCACTTC CCAAGTACTG GAATCACTGG TGTGCACCAC TATGCCTGGC
  CAGTCTTGCC ACCTTTTCTG GGGTATGTTA AATAAAGAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45416229	mCV23601294	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss135958140	ENSMUSSNP3582941	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30307408					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138613545 () rs orientation: forward

Symbol	Name	Function Class
Rr586228	regulatory region 586228	1685 bp distal
Rr586229	regulatory region 586229	753 bp distal
Rr586230	regulatory region 586230	1506 bp distal
Rr586231	regulatory region 586231	1235 bp distal
Rr586232	regulatory region 586232	769 bp distal