rs30305107 SNP Detail

Summary

• ID
  rs30305107
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:119740366 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCCGAAC CCGGGCCTCT
  CACTCTTATA AACTCCCAGC CCCCATCCAC TCACGGCAGG CCATGTCACC TCACCAGGCA
  CGCGGCTTCA GCCAATCAGG GTGGCTTCAG CCAATCAGGG TGGCAGGGGC ACGTCTCCAC
  CAAATATGGA CTTATTTACG CCACCAGCTC TGCATCCGGC AGGTGCCATC TTTCAGGTGC
  R
  GCTCGGGCAG CCCAAGTTGG GGGAGGCCAC AGCCTCCCAC AAGTGGTGAT ATGGGAAAAA
  CTTTTATGGG TCACAGTTAA AGAAAGCAGG GCTCCTCCAG GTCTCCCCCC CCCCAAAGGA
  TTAAGATTCT GTTCTCTTGA CTTGAATTTA CAGCTATGAA CAAAGTCAGA TGTGAGCAGG
  GGTCAGGATG TGAGCAGGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45415520	mCV24015854	ABI	CRAMUS_MOUSE	f	SNP		G					A		A
ss51014278	NES13912286	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	G	G	G		G	A	A	A	A	A	A
ss135700178	ENSMUSSNP7100655	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30305107					SNP	A	G	A	G	G	G	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51014278	NES13912286	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:119740366 () rs orientation: forward

Symbol	Name	Function Class
Gm65304	predicted gene, 65304	1430 bp downstream
Rr583954	regulatory region 583954	within coordinates
Rr583955	regulatory region 583955	1980 bp proximal