rs30304474 SNP Detail

Summary

• ID
  rs30304474
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145645293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAA GGCTTCGCTT CTGTTGAGAC
  M
  GCAGTGCTTC AGCTAATCAG GGTTG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45414529	mCV24197597	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	A
ss136040822	ENSMUSSNP6431709	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		A
ss321009175	CHEV_3_145602502	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30304474					SNP	C	C	A	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145645293 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
2410004B18Rik	RIKEN cDNA 2410004B18 gene			Intron
				Noncoding-Transcript-Variant
Rr398108	regulatory region 398108			1404 bp downstream
Rr586873	regulatory region 586873			1514 bp distal
Rr586874	regulatory region 586874			1568 bp distal
Rr586875	regulatory region 586875			1364 bp distal
Rr586876	regulatory region 586876			within coordinates
Tssr32317	transcription start site region 32317			1475 bp downstream