rs30301309 SNP Detail

Summary

• ID
  rs30301309
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:41570558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAACCCT AAATTAATCT
  AGTGAGTATA TGGCCTCTCA CCATTTTAGG AGGCACCAGA TTCATTTGCA CTATTAGGAA
  TGCTAGTTTT GTGCAAAAAT AAATGCCTTA CCTGTTTCCC CCCACATTTA GGTTGAAAAG
  CTTTCAAATG TTCCAAGTTA TGCTGAACCA AAAACAAATA AAACAAAATG AAAAAAAAAA
  W
  AAAAAATAAT AATAAAAAAT TTCCCCCACA AAAACATAAC AAAAAAAAAA AAAGCCCACA
  CGTTTAATTA CTGCTTTGAA ATGCAATGGT ATAGAGCACG GTTTCTGACA GTGTAATGAT
  AGCTTTGTAA GTTAGTTCAT GTCATGCTGG GAACTCTGTA TGAGGCGGCC ACAGGCAGCA
  GCAGCCCACC TACCTACCCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	MSM/Ms
ss45414223	mCV24364730	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	A
ss135042481	ENSMUSSNP1734345	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	MSM/Ms
rs30301309					SNP	T	T	?	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41570558 () rs orientation: forward

Symbol	Name	Function Class
Jade1	jade family PHD finger 1	mRNA-UTR
Rr575994	regulatory region 575994	1140 bp proximal