rs30291509 SNP Detail

Summary

• ID
  rs30291509
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52815416 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCTCTTT ATTTCCTTAT
  AGAAAGCACA AAAGGTCTTT TAAAGTCTGA GTTTTGAAGT TGCTGCCTTT GGGAGAGTTG
  GCAGTTACTG TGTACTTTAA GCCTCTGAGT GAATGGCACC AAGCTTTGGG AGAAGACAGC
  AATGCACATG GAACAGAGAG TGGCTGGGCA TCTATGCTCT GACATTGAGT GCAAAGAAAG
  R
  ATGGTTTGAC CAAGTGCTAG TGCAGTTTCA AGACTCTGGG GCTGAGAGAC AAGATGGCAT
  TGAGCAGCAA GTGCTGGTTA GAAGTGTAAA CCCCTAGGGT CTCAGCTAAG GCAGGGCTGT
  GTGCGTATCA GGAGCTCTGA CTTTAACAAC AGCAATGGAT GTCTCCATGG TGGTGTCTAG
  AATGAAAGAA CAAGTCACTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46933820	NES10824074	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	A	A	A	G		A	G	G	G		A
ss135179466	ENSMUSSNP5815859	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						A
ss320765882	CHEV_3_52711917	CHEVERUD	SCREENING_POP	f	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30291509					SNP	G	G	G	G	G	G	G	A	A	A	G	G	A	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46933820	NES10824074	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52815416 () rs orientation: forward

Symbol	Name	Function Class
Gm20750	predicted gene, 20750	within coordinates
Rr576600	regulatory region 576600	559 bp distal
Rr576601	regulatory region 576601	620 bp distal