rs30291506 SNP Detail

Summary

• ID
  rs30291506
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52815378 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATGGTTGT TGGAGGTACC
  CTTGGAAATG GCATACCTCT CTCTCTTTAT TTCCTTATAG AAAGCACAAA AGGTCTTTTA
  AAGTCTGAGT TTTGAAGTTG CTGCCTTTGG GAGAGTTGGC AGTTACTGTG TACTTTAAGC
  CTCTGAGTGA ATGGCACCAA GCTTTGGGAG AAGACAGCAA TGCACATGGA ACAGAGAGTG
  R
  CTGGGCATCT ATGCTCTGAC ATTGAGTGCA AAGAAAGAAT GGTTTGACCA AGTGCTAGTG
  CAGTTTCAAG ACTCTGGGGC TGAGAGACAA GATGGCATTG AGCAGCAAGT GCTGGTTAGA
  AGTGTAAACC CCTAGGGTCT CAGCTAAGGC AGGGCTGTGT GCGTATCAGG AGCTCTGACT
  TTAACAACAG CAATGGATGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46933817	NES10824072	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	G	G	A		G	A	A	A		G
ss135179463	ENSMUSSNP5073962	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						G
ss320765881	CHEV_3_52711879	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30291506					SNP	A	A	A	A	A	A	A	G	G	A	A	G	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46933817	NES10824072	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52815378 () rs orientation: forward

Symbol	Name	Function Class
Gm20750	predicted gene, 20750	within coordinates
Rr576600	regulatory region 576600	521 bp distal
Rr576601	regulatory region 576601	582 bp distal