rs30290667 SNP Detail

Summary

• ID
  rs30290667
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52815281 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGCTTGG GGCCACTTGG
  AGCTGGTGCT TAATAGCCCT CTTCCTTCAC TGCTTGGATA CTTACATAAA AACTGCTATT
  CTGTGTTGTG ACTGCAGGTA TGGTTGTTGG AGGTACCCTT GGAAATGGCA TACCTCTCTC
  TCTTTATTTC CTTATAGAAA GCACAAAAGG TCTTTTAAAG TCTGAGTTTT GAAGTTGCTG
  M
  CTTTGGGAGA GTTGGCAGTT ACTGTGTACT TTAAGCCTCT GAGTGAATGG CACCAAGCTT
  TGGGAGAAGA CAGCAATGCA CATGGAACAG AGAGTGGCTG GGCATCTATG CTCTGACATT
  GAGTGCAAAG AAAGAATGGT TTGACCAAGT GCTAGTGCAG TTTCAAGACT CTGGGGCTGA
  GAGACAAGAT GGCATTGAGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46933808	NES10824065	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	C	C	A		C	A	A	A		C
ss135179456	ENSMUSSNP2809070	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						C
ss320765878	CHEV_3_52711782	CHEVERUD	SCREENING_POP	f	SNP											A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30290667					SNP	A	A	A	A	A	A	C	C	C	A	A	C	A	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46933808	NES10824065	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52815281 () rs orientation: forward

Symbol	Name	Function Class
Gm20750	predicted gene, 20750	within coordinates
Rr576600	regulatory region 576600	424 bp distal
Rr576601	regulatory region 576601	485 bp distal