rs30290440 SNP Detail

Summary

• ID
  rs30290440
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52746381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGATGTAG GAAGCATGGC
  CTAATAGAGT AAGTAAAAGC AATGAGAGTG ATGCTCTTAG AGCCTGCCCC TGGAAATGGA
  TTTCCTGAGA GGAATGAGAG TCAGGAGAAA GTGAACAAAC TTTAAACTGC TCAAGGAACA
  AGAGGCAAGC AGAAATCCTG GCCCTGTGTA CGCTTTACAC ATACAGAGCA CACCCTATGT
  M
  TGATATGAAA ATAGTATCTG AAAGCAAGGC AGCATGGACT ATGTCCTGCA TTAAACGGAT
  TCACTGTGAG GCAGGAGAAG TCTTATCCCA GCCAGGAGCA CACAGTCATG GGACTGGTCC
  TGACAGGAAC GTAGACCCAG CTATGTACAG ATGAACTGAT TGATGATGGG GGTGGGGCTA
  AGAAAGAACA GCTTCTAATA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45454741	mCV24465089	ABI	CRAMUS_MOUSE	f	SNP	C	A					A	A
ss46932503	NES10828407	PERLEGEN	MM_PANEL2	f	SNP	C	A	C	C	C	C		A	A	C		C	C	C		A
ss135178657	ENSMUSSNP1249840	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						A
ss320765403	CHEV_3_52642882	CHEVERUD	SCREENING_POP	f	SNP											C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30290440					SNP	C	A	C	C	C	C	A	A	A	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46932503	NES10828407	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52746381 () rs orientation: forward

Symbol	Name	Function Class
Gm65956	predicted gene, 65956	within coordinates
Gm65967	predicted gene, 65967	1027 bp upstream
Rr576588	regulatory region 576588	1903 bp distal
Rr576589	regulatory region 576589	1201 bp proximal
Rr576590	regulatory region 576590	1422 bp proximal